MCP Server Directory

rrrrrredy/research-toolkit

Eight local research workflow tools for task setup, saved progress, stage guidance, configurable report review, and delivery checks.

the-momentum/apple-health-mcp-server

Access and analyze exported Apple Health data.

healthchainai/HealthChain

Typed FHIR tools: build, read, validate and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports.

davidmosiah/google-health-mcp

Local-first access to the Google Health API for Fitbit and Pixel Watch activity, sleep, heart, nutrition and reconciled health data.

JamesANZ/medical-mcp

Query medical information, drug databases, drug interactions and clinical guidelines.

Battam1111/omniseek

Self-hosted perception server: local bilingual ASR, vision, cross-lingual search, credentialed login-walled sources and a persistent relation graph.

cafferychen777/ChatSpatial

Spatial transcriptomics analysis: cell annotation, deconvolution, spatial statistics and visualization.

dvdsosa/zotero-native-mcp

Read and write a local Zotero library via its local API, offline: collections, items, attachments, full text, BibTeX and CSL export, tags and saved searches.

ammawla/encode-toolkit

Search, download, track and analyze functional genomics experiments from the ENCODE Project.

kimimgo/viznoir

Scientific visualization for CFD, FEA and SPH: render, slice, contour, volume-render and animate OpenFOAM, VTK and CGNS data headlessly.

Scormave/gramps-web-mcp

Gramps Web genealogy: search and edit family tree records, explore ancestors, descendants, relationships and timelines, and read media with privacy-aware previews. Includes a read-only mode and Claude Desktop bundles.

nickjlamb/pubcrawl

PubMed, Europe PMC (including preprints), FDA/DailyMed and UK eMC drug labelling, and ClinicalTrials.gov for AI assistants, including side-by-side US vs UK label comparison. Every result cites its PMID, NCT ID or DOI; no API key required.

yusong652/yade-mcp

YADE discrete element method (DEM) simulation: search API docs, run code via a REPL or background tasks, monitor progress and review task history.

davidmosiah/wellness-nourish

Nutrition and hydration tracking: food search, barcode lookup, meal estimation, intake logs and daily summaries.

nangman-infra/touch-browser

Evidence-grounded web research: verify claims on pages with citations, confidence bands and policy reports, and synthesize multi-page sessions.

openreadout/openreadout

Lets agents read raw lab-instrument files without vendor software: microscopy, mass spectrometry, chromatography, flow cytometry, NMR, electrophysiology, plate readers and qPCR. Returns metadata, images, spectra and traces as JSON, checks files for damage, and converts them to open formats (OME-TIFF, OME-Zarr, mzML, Parquet).

vassiliylakhonin/agenda-intelligence-md

Auditable strategic-risk memos (sanctions, regulation, geopolitics, trade) with Central Asia and Gulf regional specialists and per-claim evidence; no live data.

musharna/plant-genomics-mcp

Plant genomics locus lookup across Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, NCBI BLAST and more, with batch and cross-source queries.

thevibepreneur/gapbase-mcp

Search a database of startup gaps by industry, role or keyword, each with the pain point, solution direction and a blueprint link. Works offline.

davidmosiah/wellness-cgm-mcp

Local-first continuous glucose monitor data from the Dexcom Developer API and FreeStyle Libre via LibreLink Up.

salwks/mcp-techTrend

Academic, code and medical-regulatory trend monitoring across arXiv, PubMed, GitHub, Hugging Face and openFDA, with newspaper-style briefings.

NyxToolsDev/dicom-hl7-mcp-server

Bridge DICOM, HL7v2 and FHIR: cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding and integration patterns.

thinkchainai/agentinterviews_mcp

Run AI-led qualitative research interviews and surveys with Agent Interviews: create interviewers, manage projects, recruit participants and analyze results.

musharna/data-aggregator-mcp

Search and fetch research datasets across Zenodo, DataCite, NCBI and PubMed/OpenAIRE, with DOI deduplication, paper-to-data linking and verified downloads.

tushariitr-19/immigration-mcp

US immigration guidance: live Visa Bulletin, priority date checks and explanations of immigration terms.

pkotecha-eng/aria-mcp-server

Clinical research tools for trial coordinators and life sciences teams: real-time access to PubMed and ClinicalTrials.gov.

gregario/astronomy-oracle

Astronomical catalog data and observing session planning: OpenNGC deep-sky objects with visibility, rise/transit/set and alt/az calculations.

lizhuojunx86/chinese-history-mcp

Query classical Chinese texts from pre-Qin to Wei-Jin (Shiji, Zuozhuan, Analects and more) by event, person, place or virtue, with cited passages.

rewire-bio/genomics-mcp

Discover EGA, ENA, ENCODE, GEO and NCBI datasets; retrieve bounded reads, variants, sequence and signal from indexed genomic files; and query versioned reference evidence.

smaniches/uniprot-mcp

Query the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay.

zxhwolfe-dev/aiworkstation-open-source-intelligence

Research open-source AI projects: search a live radar, compare and shortlist projects, and plan stacks, keeping facts, recommendations and risks separate.

wedo911/citeguard

Check citations against Crossref for retractions, corrections or expressions of concern before they go into a paper, summary or review.

laszlopere/mcp-molecules

Chemistry tools from NIST data: molar mass with uncertainties, isotope-distribution mass spectra and name-formula lookup, offline or with online fallback.

wjgoarxiv/pymol-mcp

Headless PyMOL for molecular visualization, GROMACS/LAMMPS trajectories and clathrate-hydrate cage analysis, including H-bond networks and order parameters.

One question goes to 3-4 models; a chair returns one verdict with a confidence score and the dissent that held.

sanikacentric/biolit-mcp

Citation-grounded biomedical literature review over PubMed, Europe PMC, NCBI Gene and UniProt, with a citation-accuracy benchmark.

SEOSiri-Official/biorobotics

Bio-robotics engine that converts biological data from the UniProt API into Cartesian G-code coordinates.

Chemistry tools for pharma and biotech: NMR, MS, ICH M7 toxicity, stability, HPLC, DoE; tool calls need a key or OAuth.

Cited drug–gene (mostly CPIC/DPWG), gene and rsID variant lookups for 12 genes; educational, not medical advice.

GDP, inflation, trade, interest rates and public debt for 150+ countries from Eurostat, OECD, World Bank and IMF.

bartosz-kuc/honest-stat-gov-mcp

Polish Central Statistical Office (GUS) Local Data Bank (BDL): browse subjects, search variables and territorial units (voivodeship, powiat, gmina), get unit details, and fetch a variable's time series over a year range. No API key; queries bdl.stat.gov.pl directly with no third-party middleman.

MedicineData MCP

Chinese pharma data: 22 tools (21 query + 1 free) for drugs, targets, trials, deals and patents; queries need a key.

Curated mTOR research: evidence-labelled studies, pathway claims with supporting/conflicting studies, open questions.

Research paper search with citations from OpenAlex, Semantic Scholar, PubMed, Crossref and arXiv.

yusong652/pfc-mcp

ITASCA PFC discrete element simulation: browse documentation, execute scripts, capture plots and manage long-running tasks via a bridge to the PFC GUI.

kushaim/practice-fusion-mcp

Read-only FHIR access to the Practice Fusion EHR: search patients and review appointments, conditions, medications and lab results.

Study designs, assumptions, runnable R and Python code, and citations from research methods textbooks.

Find pinned robot code and inspect source, compatibility and execution evidence.