ChatSpatial MCP Server: Install & Setup

Install ChatSpatial in Claude Code

Claude Code

claude mcp add chatspatial -- uvx chatspatial

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

Frequently asked questions

What does the ChatSpatial MCP server do?

Spatial transcriptomics analysis: cell annotation, deconvolution, spatial statistics and visualization.

Is the ChatSpatial MCP server free?

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Does ChatSpatial run locally or remotely?

Local. Runs on your machine (stdio). You install it with npx, uvx, Docker or from source.

How do I add ChatSpatial to Claude Code?

Run: claude mcp add chatspatial -- uvx chatspatial

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