Install Pymol in Claude Code
This server doesn't publish a package to a registry, so follow the install steps in its README. Once it runs, register it with Claude Code:
claude mcp add pymol -- <command to start the server>Frequently asked questions
What does the Pymol MCP server do?
Headless PyMOL for molecular visualization, GROMACS/LAMMPS trajectories and clathrate-hydrate cage analysis, including H-bond networks and order parameters.
Is the Pymol MCP server free?
Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.
Does Pymol run locally or remotely?
Local. Runs on your machine (stdio). You install it with npx, uvx, Docker or from source.
How do I add Pymol to Claude Code?
Follow the install steps in the project's README at https://github.com/wjgoarxiv/pymol-mcp, then register it with "claude mcp add".
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