Protein Atlas MCP Server: Install & Setup

Install Protein Atlas in Claude Code

Remote URL

Claude Code

claude mcp add --transport http protein-atlas https://gateway.pipeworx.io/protein-atlas/mcp

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "protein-atlas": {
      "url": "https://gateway.pipeworx.io/protein-atlas/mcp"
    }
  }
}

npm

Claude Code

claude mcp add protein-atlas -- npx -y @pipeworx/mcp-protein-atlas

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "protein-atlas": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-protein-atlas"
      ]
    }
  }
}

Frequently asked questions

What does the Protein Atlas MCP server do?

Human Protein Atlas (HPA) MCP — keyless.

Is the Protein Atlas MCP server free?

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Does Protein Atlas run locally or remotely?

Local + Remote. Can run locally or be used as a hosted remote server.

How do I add Protein Atlas to Claude Code?

Run: claude mcp add --transport http protein-atlas https://gateway.pipeworx.io/protein-atlas/mcp

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