phylokit MCP Server: Install & Setup

Install phylokit in Claude Code

Claude Code

claude mcp add phylokit -- uvx phylokit-mcp

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "phylokit": {
      "command": "uvx",
      "args": [
        "phylokit-mcp"
      ]
    }
  }
}

Phylogenetic inference via IQ-TREE 3 — never returns a topology without its support

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Local. Runs on your machine (stdio). You install it with npx, uvx, Docker or from source.

Run: claude mcp add phylokit -- uvx phylokit-mcp

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