Local + RemoteFree

Pdbe MCP server

pipeworx-io/mcp-pdbe

PDBe (Protein Data Bank in Europe, EBI) MCP.

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Install Pdbe in Claude Code

Remote URL

Claude Code
claude mcp add --transport http pdbe https://gateway.pipeworx.io/pdbe/mcp
mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)
{
  "mcpServers": {
    "pdbe": {
      "url": "https://gateway.pipeworx.io/pdbe/mcp"
    }
  }
}

npm

Claude Code
claude mcp add pdbe -- npx -y @pipeworx/mcp-pdbe
mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)
{
  "mcpServers": {
    "pdbe": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-pdbe"
      ]
    }
  }
}

Frequently asked questions

What does the Pdbe MCP server do?

PDBe (Protein Data Bank in Europe, EBI) MCP.

Is the Pdbe MCP server free?

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Does Pdbe run locally or remotely?

Local + Remote. Can run locally or be used as a hosted remote server.

How do I add Pdbe to Claude Code?

Run: claude mcp add --transport http pdbe https://gateway.pipeworx.io/pdbe/mcp

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