Ncbi Variation MCP Server: Install & Setup

Install Ncbi Variation in Claude Code

Remote URL

Claude Code

claude mcp add --transport http ncbi-variation https://gateway.pipeworx.io/ncbi-variation/mcp

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "ncbi-variation": {
      "url": "https://gateway.pipeworx.io/ncbi-variation/mcp"
    }
  }
}

npm

Claude Code

claude mcp add ncbi-variation -- npx -y @pipeworx/mcp-ncbi-variation

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "ncbi-variation": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-ncbi-variation"
      ]
    }
  }
}

Frequently asked questions

What does the Ncbi Variation MCP server do?

dbSNP refSNP records and HGVS/SPDI/rsID normalization for human genetic variants, from NCBI…

Is the Ncbi Variation MCP server free?

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Does Ncbi Variation run locally or remotely?

Local + Remote. Can run locally or be used as a hosted remote server.

How do I add Ncbi Variation to Claude Code?

Run: claude mcp add --transport http ncbi-variation https://gateway.pipeworx.io/ncbi-variation/mcp

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