Mgnify MCP Server: Install & Setup

Install Mgnify in Claude Code

Claude Code

claude mcp add --transport http mgnify https://gateway.pipeworx.io/mgnify/mcp

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "mgnify": {
      "url": "https://gateway.pipeworx.io/mgnify/mcp"
    }
  }
}

Claude Code

claude mcp add mgnify -- npx -y @pipeworx/mcp-mgnify

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "mgnify": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-mgnify"
      ]
    }
  }
}

MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Local + Remote. Can run locally or be used as a hosted remote server.

Run: claude mcp add --transport http mgnify https://gateway.pipeworx.io/mgnify/mcp

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