Metabolights MCP Server: Install & Setup

Install Metabolights in Claude Code

Remote URL

Claude Code

claude mcp add --transport http metabolights https://gateway.pipeworx.io/metabolights/mcp

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "metabolights": {
      "url": "https://gateway.pipeworx.io/metabolights/mcp"
    }
  }
}

npm

Claude Code

claude mcp add metabolights -- npx -y @pipeworx/mcp-metabolights

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "metabolights": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-metabolights"
      ]
    }
  }
}

Frequently asked questions

What does the Metabolights MCP server do?

MetaboLights MCP — EBI's metabolomics study repository.

Is the Metabolights MCP server free?

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Does Metabolights run locally or remotely?

Local + Remote. Can run locally or be used as a hosted remote server.

How do I add Metabolights to Claude Code?

Run: claude mcp add --transport http metabolights https://gateway.pipeworx.io/metabolights/mcp

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