Local + RemoteFree

Ena MCP server

pipeworx-io/mcp-ena

European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies…

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Install Ena in Claude Code

Remote URL

Claude Code
claude mcp add --transport http ena https://gateway.pipeworx.io/ena/mcp
mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)
{
  "mcpServers": {
    "ena": {
      "url": "https://gateway.pipeworx.io/ena/mcp"
    }
  }
}

npm

Claude Code
claude mcp add ena -- npx -y @pipeworx/mcp-ena
mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)
{
  "mcpServers": {
    "ena": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-ena"
      ]
    }
  }
}

Frequently asked questions

What does the Ena MCP server do?

European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies…

Is the Ena MCP server free?

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Does Ena run locally or remotely?

Local + Remote. Can run locally or be used as a hosted remote server.

How do I add Ena to Claude Code?

Run: claude mcp add --transport http ena https://gateway.pipeworx.io/ena/mcp

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