Bioportal MCP Server: Install & Setup

Install Bioportal in Claude Code

Claude Code

claude mcp add --transport http bioportal https://gateway.pipeworx.io/bioportal/mcp

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "bioportal": {
      "url": "https://gateway.pipeworx.io/bioportal/mcp"
    }
  }
}

Claude Code

claude mcp add bioportal -- npx -y @pipeworx/mcp-bioportal

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "bioportal": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-bioportal"
      ]
    }
  }
}

BioPortal — NCBO's biomedical ontology repository (data.bioontology.org).

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Local + Remote. Can run locally or be used as a hosted remote server.

Run: claude mcp add --transport http bioportal https://gateway.pipeworx.io/bioportal/mcp

reactive-resume/reactive-resume

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HeyPuter/puter

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pascalorg/editor

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JanDeDobbeleer/oh-my-posh

Validate oh-my-posh configurations and segment snippets against the official schema.

instantdb/instant

Create, manage, and update applications on InstantDB, the modern Firebase.

nhost/nhost

Let your users work with their own data through an AI assistant, limited to what they can see.