BioHarbor MCP Server: Install & Setup

Install BioHarbor in Claude Code

Claude Code

claude mcp add bioharbor -- uvx bioharbor

mcp.json (Claude Desktop, Cursor, VS Code, Windsurf)

{
  "mcpServers": {
    "bioharbor": {
      "command": "uvx",
      "args": [
        "bioharbor"
      ]
    }
  }
}

Frequently asked questions

What does the BioHarbor MCP server do?

Run MMseqs2 homology search, ESMFold structure prediction and sequence tools on your own GPUs, with GPU-aware scheduling on shared machines, input prechecks and per-run provenance.

Is the BioHarbor MCP server free?

Yes, most likely. Open source and no paid account or API key is mentioned in the listing. Check the provider for current pricing.

Does BioHarbor run locally or remotely?

Local. Runs on your machine (stdio). You install it with npx, uvx, Docker or from source.

How do I add BioHarbor to Claude Code?

Run: claude mcp add bioharbor -- uvx bioharbor

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